- How awful the story reeked of Christian overture. (CLU may as well have been Clucifer, ISOs as Flynn's oppressed chosen people, Sam as a virtual son-of-god, etc.)
- The idea that Quorra, a representation of data whose virtual body is held together by what seems an intrinsic field designed to keep her from turning into billions and billions of tiny pieces, could be materialized in the real world. Note that I wouldn't have a problem with this if Sam hadn't bled on the game-field, showing us that the Grid, and the machine used to access it, makes an obvious distinction between human and data.